Boundary mode

The boundary key is used to show image atoms outside the cell. The default value is [[0, 1], [0, 1], [0, 1]], thus no atoms outside the cell will be shown.

It has two purposes:

  • For the visualization of a crystal, one usually shows the atoms on the unit cell boundary.

  • In the DFT calculation, the periodic boundary condition (PBC) is very common. When editing a structure, one may want to see the how the PBC image atoms change.

Show the atoms on the unit cell:

editor.avr.boundary = [
    [-0.01, 1.01],
    [-0.01, 1.01],
    [-0.01, 1.01],
  ];

No boundary atoms

With boundary atoms

no_boundary

boundary

Supercell view

editor.avr.boundary = [[-1, 2], [-1, 2], [-1, 2]]
../_images/example-boundary-supercell.png